BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB013C03SP1|AL426488
(859 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1000 930 0.0
3x_Contig522 345 9e-95
>3x_Contig1000
Length = 4837
Score = 930 bits (469), Expect = 0.0
Identities = 469/469 (100%)
Strand = Plus / Minus
Query: 382 tacccttaatgaatgtttgaatgaaacttgagctagctttgccttctgcaatggatattg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4837 tacccttaatgaatgtttgaatgaaacttgagctagctttgccttctgcaatggatattg 4778
Query: 442 atccggcgacaagtagttcggaggtagtagtgccagatagatggcagatgacgtagcata 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4777 atccggcgacaagtagttcggaggtagtagtgccagatagatggcagatgacgtagcata 4718
Query: 502 caaataaagtcccggcaatgttccccaaccaacttattgcccaactaacgaaaagatcat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4717 caaataaagtcccggcaatgttccccaaccaacttattgcccaactaacgaaaagatcat 4658
Query: 562 atatggatacagctccacgtagaaaacccacagtaaagaacaagacgttagagttgaaaa 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4657 atatggatacagctccacgtagaaaacccacagtaaagaacaagacgttagagttgaaaa 4598
Query: 622 gatcagcaccgttgatgataacgtaaaagagaccaatagagaaagtgaaggctcctaaga 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4597 gatcagcaccgttgatgataacgtaaaagagaccaatagagaaagtgaaggctcctaaga 4538
Query: 682 agtttgtcattcctggatgttgttcgaaaattaacggattctcggatcgcgctgcgacga 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4537 agtttgtcattcctggatgttgttcgaaaattaacggattctcggatcgcgctgcgacga 4478
Query: 742 aaagcatgccacctgcactgaagagtattccacccatcaatgagtttatcaccaaagtat 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4477 aaagcatgccacctgcactgaagagtattccacccatcaatgagtttatcaccaaagtat 4418
Query: 802 caaatcggagtcttgccttcttcatagaagtcgcaacaacagcgagagc 850
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4417 caaatcggagtcttgccttcttcatagaagtcgcaacaacagcgagagc 4369
>3x_Contig522
Length = 1626
Score = 345 bits (174), Expect = 9e-95
Identities = 204/213 (95%), Gaps = 1/213 (0%)
Strand = Plus / Plus
Query: 1 gatccaccctaacgactcttgagtccatattcaactcaggttgctcatctctagcct-ca 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1412 gatccaccctaacgactcttgagtccatattcaactcaggttgctcatctctagcctgca 1471
Query: 60 aattcaggtaaggatagttgtttcctatcgcgttccacaacacgtaagttanggtaatat 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1472 aattcaggtaaggatagttgtttcctatcgcgttccacaacacgtaagtgtaggtaatat 1531
Query: 120 ggaatcactccactaaagaaggacccacctataatgtttcctaaggttgctgggatgagt 179
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1532 ggaatcactccactaaagaaggacccacctataatgtttcctaaaatgcttgggatgagt 1591
Query: 180 aatttccaaatataagtaccgactgacacattt 212
|||||||||||||||||||||||||||||||||
Sbjct: 1592 aatttccaaatataagtaccgactgacacattt 1624
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5138
Number of Sequences: 1807
Number of extensions: 5138
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 2
length of query: 859
length of database: 10,358,551
effective HSP length: 16
effective length of query: 843
effective length of database: 10,329,639
effective search space: 8707885677
effective search space used: 8707885677
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)